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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1451924_1452020_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1451924 - 1452020
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTGTTTCACT
Flanking Amino Acid:
RTFEEFKRLHKELKRKFPIE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.9
0.63
0.8
74.9
35
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
62.2
0.46
2.2
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029299
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040993
1451290 - 1455820
4531