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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1452134_1455798_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1452134 - 1455798
Intron Length:
3665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGTGACAA
5'SS Class:
weak_major
3'SS Sequence:
CACAGTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCCCCACAATG
Flanking Amino Acid:
EEKSLIFFQRLEMECNP*
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.1
51.3
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
62.2
0.28
1
53.6
41.1
Minor 5ss
34.5
-1.8
3.1
44.2
44.6
Minor BPS
48.5
-0.2
1.9
58.26
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029299
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040993
1451290 - 1455820
4531