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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14523365_14527283_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14523365 - 14527283
Intron Length:
3919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAT
5'SS Class:
major
3'SS Sequence:
TTTTGATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
73.4
37.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.4
0.73
0.8
76.6
36.5
Minor 5ss
46.8
-0.3
2.7
66.2
44.9
Minor BPS
51.3
0.03
2.4
76.36
40.9

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043774
14241257 - 14527469
286213