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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1456850_1457206_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1456850 - 1457206
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
GTATCACCCACT
Flanking Amino Acid:
SAVESLLPYTERHFQRLSRL
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
41.5
-0.5
2.4
64.5
44.8

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071