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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1457996_1458376_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1457996 - 1458376
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CTCTCCTTAATT
Flanking Amino Acid:
RPHTVLTVVKAILKESDGRK
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
68
0.45
1
57.8
39
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
82.1
1.09
1.1
87.41
38.9

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071