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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1458481_1458957_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1458481 - 1458957
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTTATGT
Flanking Amino Acid:
AQAKQEEQIMKEQELSNLLH
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.9
72.5
42.4
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
66.4
0.59
1.9
84.83
41.7

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071