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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1462149_1462388_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1462149 - 1462388
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTCCCTTTACA
Flanking Amino Acid:
KGLMFVSCSKDKSIRLWRMN
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.5
30.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
85.5
0.8
0.7
79.5
26
Minor 5ss
28.5
-2.5
2.8
32.8
42.1
Minor BPS
69.7
0.61
1.6
77.2
39.4

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071