About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1464298_1464508_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1464298 - 1464508
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTATTTTAACT
Flanking Amino Acid:
AFAADGDTLISSGRDKICMV
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.7
37.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.6
0.78
0.8
78.4
34.7
Minor 5ss
32.7
-2
3.8
49.3
47.2
Minor BPS
73.9
0.83
1.2
83.78
37.4

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071