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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1464680_1465128_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1464680 - 1465128
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTATTCCCATCT
Flanking Amino Acid:
HNLKGSSGVVHLVEFHPDIS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.5
0.78
0.7
76.7
32
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
45.4
-0.2
2
66.66
43.4

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071