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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1465862_1466305_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1465862 - 1466305
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
AATTGTTGATTT
Flanking Amino Acid:
TAFALSPDDEILVTGSRALL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
73.3
0.52
0.9
69.3
36.9
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
45.5
-0.2
2
64.09
40.8

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071