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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1466797_1466886_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1466797 - 1466886
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
TGTCCCTTATCT
Flanking Amino Acid:
AAAGPLRFKSNYAVSRRMEP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
60.3
39.3
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
86.5
0.82
0.7
84.3
23.5
Minor 5ss
33
-1.9
3.4
41
39.9
Minor BPS
72.1
0.77
1.6
86.73
38.6

Associated Gene:

Gene:
TBL3
Ensembl Gene ID:
ENSAPLG00000008515
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008914
1456621 - 1467691
11071