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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1468836_1469287_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1468836 - 1469287
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGAATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AATGATTGAATC
Flanking Amino Acid:
EIYLFSLPIKESEIIDFFLG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
68
0.45
1
57.8
39
Major PPT
76.7
0.6
1
69.9
41
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
47.4
-0.2
1.6
55.72
36.4

Associated Gene:

Gene:
RPS2
Ensembl Gene ID:
ENSAPLG00000008455
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026201
1468403 - 1471516
3114
ENSAPLT00000008826
1468403 - 1471516
3114