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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1472562_1472837_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1472562 - 1472837
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
ATCTCCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATACTC
Flanking Amino Acid:
FEAEAQWRRDRMVDQQIVEI
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.45
0.9
64.6
35.9
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
51.6
0.03
1.9
67.43
38.4

Associated Gene:

Gene:
NDUFB10
Ensembl Gene ID:
ENSAPLG00000008454
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008773
1471984 - 1473402
1419