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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1476019_1476898_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1476019 - 1476898
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
GCTTCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAGCTATTAAAC
Flanking Amino Acid:
DECRRRFYKNWHKSKKKAFT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.6
0.55
0.9
69.1
37
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
49.6
-0
1.7
59.55
38.7

Associated Gene:

Gene:
RPL3L
Ensembl Gene ID:
ENSAPLG00000008390
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048061
1474877 - 1481826
6950
ENSAPLT00000008733
1474176 - 1481826
7651