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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1482919_1483337_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1482919 - 1483337
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTTTC
5'SS Class:
major
3'SS Sequence:
TTCCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
IEKKLQHEFQKILVMPNMDD
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
69.4
38.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
84
0.76
0.7
79.2
26.4
Minor 5ss
43.8
-0.7
3
61.2
43.7
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018980
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028812
1482793 - 1487023
4231