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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1484341_1484508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1484341 - 1484508
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGGCACTGACA
Flanking Amino Acid:
STSKPTINDRGLWVDMEVTY
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74.3
34.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66
0.36
0.9
61.3
29.1
Minor 5ss
40.8
-1
2.8
53
43.8
Minor BPS
45.2
-0.3
2
57.21
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018980
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028812
1482793 - 1487023
4231