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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1484609_1484728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1484609 - 1484728
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTCTCTCCATC
Flanking Amino Acid:
KIQKKLSKIKLPYFMNELTL
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
78.9
0.65
0.8
78.6
28.7
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
49.3
-0
1.9
67.51
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018980
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028812
1482793 - 1487023
4231