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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14873779_14874438_R

Intron Information:

Intron Rank:
129084
Intron Class:
major
Intron Phase:
Intron Coordinates:
14873779 - 14874438
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGGA
5'SS Class:
major
3'SS Sequence:
ACTTGTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGATATTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
59.5
39.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.3
0.48
0.9
65.7
39.6
Minor 5ss
36.4
-1.5
3.5
45.6
47.7
Minor BPS
52.3
0.15
1.8
70.32
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016614
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022577
14873292 - 14875017
1726