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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1490803_1491181_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1490803 - 1491181
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CCCTCTGCCATT
Flanking Amino Acid:
GEAFRDHFEPGIYACARCGY
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
56.7
42.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
70.6
0.46
0.7
61.4
29.1
Minor 5ss
30.8
-2.2
3.2
30.6
42.7
Minor BPS
37.8
-0.8
2.3
50.4
44.9

Associated Gene:

Gene:
MSRB1
Ensembl Gene ID:
ENSAPLG00000021117
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027573
1489793 - 1491543
1751