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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1491325_1491428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1491325 - 1491428
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CCCTTGTGACCC
Flanking Amino Acid:
KRKERPGAFKVSCGKCGNGL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
68.8
0.42
1.1
61.6
44.5
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
39.7
-0.8
2.2
45.43
43.8

Associated Gene:

Gene:
MSRB1
Ensembl Gene ID:
ENSAPLG00000021117
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027573
1489793 - 1491543
1751