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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15072669_15110755_R

Intron Information:

Intron Rank:
147348
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
15072669 - 15110755
Intron Length:
38087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTCCCAC
5'SS Class:
weak_major
3'SS Sequence:
GCTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GCTTTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.3
48
42.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
81.6
0.71
0.9
81.4
35
Minor 5ss
46.2
-0.4
2.6
59.9
44.8
Minor BPS
59.8
0.3
1.6
66.98
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026614
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047785
15071106 - 15111167
40062