About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1512366_1539768_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1512366 - 1539768
Intron Length:
27403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCAGCTCTGACC
Flanking Amino Acid:
RCYEKGLRWYRSLMPRTLEG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
45.8
-0.3
1.7
50.34
41

Associated Gene:

Gene:
HS3ST6
Ensembl Gene ID:
ENSAPLG00000017464
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001371
1511995 - 1540387
28393