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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15139506_15169135_R

Intron Information:

Intron Rank:
131494
Intron Class:
major
Intron Phase:
Intron Coordinates:
15139506 - 15169135
Intron Length:
29630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CCTTTGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
76.2
39.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
38.5
-1.3
3.1
45.5
42.9
Minor BPS
48.5
-0
2.3
70.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000841
15139295 - 15169348
30054