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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15139506_15207678_R

Intron Information:

Intron Rank:
131505
Intron Class:
major
Intron Phase:
Intron Coordinates:
15139506 - 15207678
Intron Length:
68173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CCTTTGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
48.5
-0
2.3
70.32
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033478
15132273 - 15213516
81244