Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15164401_15169135_R

Intron Information:

Intron Rank:

131495

Intron Class:

major

Intron Phase:

Intron Coordinates:

15164401 - 15169135

Intron Length:

4735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTATC

5'SS Class:

major

3'SS Sequence:

AATCTTTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TATTTTTGAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

1.1

76.2

39.9

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

78.4

0.64

0.9

72.5

36.7

Minor 5ss

38.5

-1.3

3.1

45.5

42.9

Minor BPS

64.9

0.45

1.3

71.78

33.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047583

15163270 - 15195500

32231

ENSAPLT00000042868

15163270 - 15179649

16380

ENSAPLT00000030674

15163270 - 15195500

32231

ENSAPLT00000025694

15163270 - 15181100

17831

ENSAPLT00000048215

15163270 - 15188389

25120