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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15173659_15180675_R

Intron Information:

Intron Rank:
131497
Intron Class:
major
Intron Phase:
Intron Coordinates:
15173659 - 15180675
Intron Length:
7017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025694
15163270 - 15181100
17831