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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15173659_15188288_R

Intron Information:

Intron Rank:
131532
Intron Class:
major
Intron Phase:
Intron Coordinates:
15173659 - 15188288
Intron Length:
14630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
ATTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048215
15163270 - 15188389
25120