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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15173659_15195350_R

Intron Information:

Intron Rank:
131529
Intron Class:
major
Intron Phase:
Intron Coordinates:
15173659 - 15195350
Intron Length:
21692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047583
15163270 - 15195500
32231