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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15173843_15179160_R

Intron Information:

Intron Rank:
131516
Intron Class:
major
Intron Phase:
Intron Coordinates:
15173843 - 15179160
Intron Length:
5318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTTGTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.1
0.57
1.1
75.4
37.8
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
59.7
0.17
1.7
65.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042868
15163270 - 15179649
16380
ENSAPLT00000042076
15132273 - 15179649
47377