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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15173843_15195350_R

Intron Information:

Intron Rank:
131503
Intron Class:
major
Intron Phase:
Intron Coordinates:
15173843 - 15195350
Intron Length:
21508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.1
0.57
1.1
75.4
37.8
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
59.7
0.17
1.7
65.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030674
15163270 - 15195500
32231