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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15252367_15266370_R

Intron Information:

Intron Rank:
131507
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
15252367 - 15266370
Intron Length:
14004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTTA
5'SS Class:
weak_major
3'SS Sequence:
ACTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAATCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
69.5
37.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.7
0.8
0.8
77.4
36.3
Minor 5ss
62.6
0.42
2.2
73.5
43.1
Minor BPS
50.8
0.02
1.6
60.76
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045357
15251367 - 15280225
28859
ENSAPLT00000038618
15251367 - 15283454
32088