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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15252367_15267100_R

Intron Information:

Intron Rank:
131498
Intron Class:
major
Intron Phase:
Intron Coordinates:
15252367 - 15267100
Intron Length:
14734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAATCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.7
0.8
0.8
77.4
36.3
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
50.8
0.02
1.6
60.76
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029472
15251326 - 15283454
32129