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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15267203_15279808_R

Intron Information:

Intron Rank:
131526
Intron Class:
major
Intron Phase:
Intron Coordinates:
15267203 - 15279808
Intron Length:
12606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GTTTCCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
68.8
42.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
37.8
-1.4
3.1
49.2
47.1
Minor BPS
72.9
0.8
1.5
87.72
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017970
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045357
15251367 - 15280225
28859