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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15298325_15298937_F

Intron Information:

Intron Rank:
143686
Intron Class:
major
Intron Phase:
Intron Coordinates:
15298325 - 15298937
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GCACCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.8
0.63
0.8
72.5
32
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
54.4
0.22
1.7
66.81
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027422
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024656
15298206 - 15304164
5959