Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15307979_15325572_F

Intron Information:

Intron Rank:

124773

Intron Class:

major

Intron Phase:

Intron Coordinates:

15307979 - 15325572

Intron Length:

17594

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGGTT

5'SS Class:

strong_major

3'SS Sequence:

ACACTTTTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TAAGCTAAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

78.6

35.4

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

78.6

0.64

0.9

72.1

37.1

Minor 5ss

41.2

-1

3.7

63.6

48.1

Minor BPS

43.3

-0.4

60.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044675

15307783 - 15335026

27244

ENSAPLT00000043291

15307783 - 15330730

22948