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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15325677_15330221_F

Intron Information:

Intron Rank:
124774
Intron Class:
major
Intron Phase:
Intron Coordinates:
15325677 - 15330221
Intron Length:
4545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTGCCTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.7
0.56
0.8
69.5
31.3
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
52
0.05
2.1
71.19
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017270
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043291
15307783 - 15330730
22948