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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15355989_15357650_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15355989 - 15357650
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAA
U12 Branch Point Sequence:
GAACCCTCAGCT
Flanking Amino Acid:
SFTLAAVSVDRYLAICYPLR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
49.7
-0
1.3
43.1
41.8
Major PPT
71.4
0.48
0.8
61.9
34.8
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
49.2
0.02
1.8
65.69
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013376
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013926
15355589 - 15358389
2801