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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15367804_15368595_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15367804 - 15368595
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGCTT
5'SS Class:
major
3'SS Sequence:
TCTTCTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
CTAACTTAAAGT
Flanking Amino Acid:
LHVLQPSTTKNFKPAGGSIL
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
71.4
39.9
Major BPS
69
0.47
1
69.9
32.6
Major PPT
81.4
0.71
0.7
74.1
31.1
Minor 5ss
31.3
-2.1
3.5
47.3
48.1
Minor BPS
47.7
-0
2
64.8
45.8

Associated Gene:

Gene:
ROGDI
Ensembl Gene ID:
ENSAPLG00000013380
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013945
15365750 - 15377532
11783