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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15369256_15372458_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15369256 - 15372458
Intron Length:
3203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CGTTATCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
TGTACGTTATCT
Flanking Amino Acid:
HFKTGSEVLKLMDAVMLQLS
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
79.8
0.67
0.9
72.5
37.5
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
51.8
0.13
2.3
77.62
44.4

Associated Gene:

Gene:
ROGDI
Ensembl Gene ID:
ENSAPLG00000013380
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013945
15365750 - 15377532
11783