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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15372555_15374948_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15372555 - 15374948
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
TGTACCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GCTTCTATAATG
Flanking Amino Acid:
REDKQWKLQQIQDARNHVNQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
68.7
38.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
80
0.67
0.9
73.3
36.9
Minor 5ss
39.3
-1.2
3.5
55.9
48.2
Minor BPS
56.8
0.08
1.7
60.65
41.7

Associated Gene:

Gene:
ROGDI
Ensembl Gene ID:
ENSAPLG00000013380
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013945
15365750 - 15377532
11783