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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15375030_15375896_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15375030 - 15375896
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTTTCTTCAAG
Flanking Amino Acid:
TLQGDALCQADVNLKMPRSN
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.9
0.67
1
79.2
33.2
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
54.3
-0
2
63.72
44.3

Associated Gene:

Gene:
ROGDI
Ensembl Gene ID:
ENSAPLG00000013380
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013945
15365750 - 15377532
11783