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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15385421_15385887_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15385421 - 15385887
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGTTC
5'SS Class:
major
3'SS Sequence:
TTCCTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCCTCTCAACA
Flanking Amino Acid:
ASIFLDQKCQNILQGNFKPD
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
70
35.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77.3
0.61
0.8
73.4
30.1
Minor 5ss
42.4
-0.8
3.4
58.5
40.8
Minor BPS
63.7
0.43
1.5
72.76
39.1

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027383
15385110 - 15397344
12235
ENSAPLT00000014335
15385158 - 15399718
14561
ENSAPLT00000047552
15385110 - 15397344
12235
ENSAPLT00000046728
15385110 - 15397344
12235
ENSAPLT00000046682
15385110 - 15397344
12235