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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15386692_15387099_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15386692 - 15387099
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATCCACT
Flanking Amino Acid:
DADTVTELAQVIVSRGGRFL
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.7
0.78
0.8
76.7
36.8
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
47.6
-0.1
2.2
73.97
42.5

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014335
15385158 - 15399718
14561
ENSAPLT00000047552
15385110 - 15397344
12235
ENSAPLT00000046728
15385110 - 15397344
12235
ENSAPLT00000046682
15385110 - 15397344
12235
ENSAPLT00000027383
15385110 - 15397344
12235