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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15387614_15388714_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15387614 - 15388714
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGACTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTCTTACGT
Flanking Amino Acid:
VTVWNRTAEKCDLFIQEGAR
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.9
0.58
1
69.2
41.6
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
66.1
0.58
1.9
86.99
39.2

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014335
15385158 - 15399718
14561
ENSAPLT00000047552
15385110 - 15397344
12235
ENSAPLT00000046728
15385110 - 15397344
12235
ENSAPLT00000046682
15385110 - 15397344
12235
ENSAPLT00000027383
15385110 - 15397344
12235