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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15390690_15391889_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15390690 - 15391889
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGCTTTTCATT
Flanking Amino Acid:
HHFLLSQTEKETGSTSIQAA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
100
1.24
0.5
100
0
Major PPT
82.9
0.74
0.9
80.4
36.9
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
48.7
-0
1.7
64.98
40.4

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047552
15385110 - 15397344
12235