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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15390830_15393409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15390830 - 15393409
Intron Length:
2580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCCTCTGAATG
Flanking Amino Acid:
GFKWPPSVSEPAVCYQAITK
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.7
0.71
0.8
76.6
31
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
57
0.08
1.5
61.15
41.1

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046728
15385110 - 15397344
12235