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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15396612_15397205_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15396612 - 15397205
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTAATCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CTTTCCTTACTA
Flanking Amino Acid:
FLRKTKGKDQASSHNSSEEK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
73.6
0.53
0.9
69.8
41
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
71.6
0.67
1.6
78.78
38.5

Associated Gene:

Gene:
GLYR1
Ensembl Gene ID:
ENSAPLG00000013726
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046728
15385110 - 15397344
12235
ENSAPLT00000046682
15385110 - 15397344
12235
ENSAPLT00000027383
15385110 - 15397344
12235
ENSAPLT00000014335
15385158 - 15399718
14561
ENSAPLT00000047552
15385110 - 15397344
12235