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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15428444_15429073_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15428444 - 15429073
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTTGTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CTTTGTACATTT
Flanking Amino Acid:
GDTPVLDKGQSEVAAVCNGK
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
71.2
35.2
Major BPS
67.6
0.44
1.2
75
40
Major PPT
78.6
0.64
0.8
77.2
31.6
Minor 5ss
38.7
-1.3
2.9
47.2
42.3
Minor BPS
39.8
-0.7
2.2
60.32
44.1

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996