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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15429260_15429716_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15429260 - 15429716
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
GCTGCTAGATTC
Flanking Amino Acid:
AHVLCISSIPAASESDYPPG
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
81.5
0.71
0.8
77.8
31
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
39.2
-0.8
1.8
44.26
38

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996