About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15429883_15430807_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15429883 - 15430807
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TGCTCTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GCTCTCCTGAAG
Flanking Amino Acid:
SNHTSPEKKKAKEFHEMDAT
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
68
0.4
1
68.1
32.5
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
43.9
-0.6
1.8
46.38
40

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019488
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996